STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1092Acetyltransferase, GNAT family; Identified by match to protein family HMM. (181 aa)    
Predicted Functional Partners:
CC_1089
Transcriptional regulator, putative; Identified by match to protein family HMM.
 
     0.644
CC_1091
Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.
 
  
 0.614
CC_3239
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
 
  
 0.553
CC_0722
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.496
CC_1122
Identified by match to PFAM protein family HMM PF01804.
  
     0.468
CC_2149
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.456
CC_1167
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.452
argG
Argininosuccinate synthase; Identified by match to TIGR protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.448
CC_3436
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.439
CC_1090
Identified by match to protein family HMM.
       0.406
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.