STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shpAHypothetical protein; Identified by Glimmer2; putative. (112 aa)    
Predicted Functional Partners:
shkA
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.899
pleD
Stalked-cell differentiation controlling protein; Response regulator that is part of a signal transduction pathway controlling cell differentiation in the swarmer-to-stalked cell transition.
  
 
 0.823
CC_1220
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.786
CC_3396
Identified by match to protein family HMM.
  
  
 0.779
flaF
flaF protein; Required for synthesis of the 25 kDa and 27 kDa flagellins and appears to be important for flagellin assembly.
   
    0.766
CC_0921
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.765
cheL
Chemotactic signal-response protein CheL; Similar to GB:M91448 SP:P33980 PID:144242; identified by sequence similarity; putative.
   
    0.753
staR
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
      
 0.731
CC_1842
Response regulator, putative; Identified by match to protein family HMM.
  
 
 0.729
CC_0431
CheX protein; Similar to GP:3282790; identified by sequence similarity; putative.
  
  
 0.691
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.