CC_1122 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CC_1122

Identified by match to PFAM protein family HMM PF01804. (725 aa)

Predicted Functional Partners:

CC_0985

0.745

CC_3357

0.711

CC_1556

0.697

CC_0122

0.663

CC_0939

0.628

CC_0940

0.606

CC_3032

0.569

CC_1123

0.546

CC_3239

0.518

CC_3204

0.471

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0122	CC_0985	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.663
CC_0122	CC_1122	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF01804.	0.663
CC_0122	CC_1556	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.704
CC_0122	CC_3032	Hypothetical protein; Identified by Glimmer2; putative.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.592
CC_0122	CC_3357	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.604
CC_0939	CC_0985	Isopenicillin N epimerase, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.454
CC_0939	CC_1122	Isopenicillin N epimerase, putative; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF01804.	0.628
CC_0939	CC_1556	Isopenicillin N epimerase, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.401
CC_0940	CC_1122	Acylase, putative; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative.	Identified by match to PFAM protein family HMM PF01804.	0.606
CC_0940	CC_3032	Acylase, putative; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.553
CC_0985	CC_0122	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.663
CC_0985	CC_0939	Hypothetical protein; Identified by Glimmer2; putative.	Isopenicillin N epimerase, putative; Identified by match to protein family HMM.	0.454
CC_0985	CC_1122	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF01804.	0.745
CC_0985	CC_1556	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.679
CC_0985	CC_3032	Hypothetical protein; Identified by Glimmer2; putative.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.640
CC_0985	CC_3357	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.669
CC_1122	CC_0122	Identified by match to PFAM protein family HMM PF01804.	Hypothetical protein; Identified by Glimmer2; putative.	0.663
CC_1122	CC_0939	Identified by match to PFAM protein family HMM PF01804.	Isopenicillin N epimerase, putative; Identified by match to protein family HMM.	0.628
CC_1122	CC_0940	Identified by match to PFAM protein family HMM PF01804.	Acylase, putative; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative.	0.606
CC_1122	CC_0985	Identified by match to PFAM protein family HMM PF01804.	Hypothetical protein; Identified by Glimmer2; putative.	0.745