STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1135Amylosucrase; Identified by match to protein family HMM. (584 aa)    
Predicted Functional Partners:
CC_1134
Fructokinase; Identified by match to protein family HMM.
  
  
 0.948
CC_1133
Transporter, putative; Identified by match to protein family HMM.
  
  
 0.940
CC_1136
TonB-dependent receptor; Identified by match to protein family HMM.
     
 0.798
CC_1630
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.
   
  
 0.746
CC_1631
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.737
CC_1632
Identified by match to protein family HMM.
   
  
 0.731
CC_3126
Amino acid permease; Identified by match to PFAM protein family HMM PF00324.
   
 0.727
CC_0426
Amino acid permease family protein; Identified by match to PFAM protein family HMM PF00324.
   
 0.715
CC_1184
Amino acid permease family protein; Identified by match to PFAM protein family HMM PF00324.
   
 0.715
CC_0449
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
  
  
 0.692
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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