STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1148Conserved hypothetical protein; Identified by Glimmer2; putative. (245 aa)    
Predicted Functional Partners:
CC_1147
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
  
 0.959
CC_1149
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.943
CC_1150
DNA-binding response regulator; Identified by match to protein family HMM.
 
  
 0.938
lldD
L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
  
    0.766
CC_1146
Identified by match to protein family HMM.
  
    0.531
CC_3183
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.495
CC_0324
NADH dehydrogenase; Identified by match to PFAM protein family HMM PF00881.
  
  
 0.475
CC_3566
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
  
 0.471
CC_1449
Identified by match to PFAM protein family HMM PF00881.
  
  
 0.470
CC_2653
Identified by match to PFAM protein family HMM PF00881.
  
  
 0.470
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.