STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1165acyl-CoA synthetase; Identified by match to protein family HMM. (567 aa)    
Predicted Functional Partners:
CC_1162
Aminotransferase, class II; Identified by match to protein family HMM.
 
 0.974
CC_1164
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.960
CC_1163
Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.
 
 
 0.935
CC_1166
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.932
CC_1167
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.916
CC_1674
Malonyl CoA-acyl carrier protein transacylase; Identified by match to TIGR protein family HMM TIGR00128.
    
 0.905
bioF
8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
 
 
 0.899
CC_0427
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
 
 
  0.885
CC_1355
5-aminolevulinic acid synthase; Identified by match to protein family HMM.
 
 
 0.876
CC_2400
acid-CoA ligase, putative; Identified by match to protein family HMM.
 
    
0.875
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.