STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1176Identified by match to protein family HMM. (317 aa)    
Predicted Functional Partners:
CC_0544
Nuclease, putative; Identified by match to protein family HMM.
   
   0.937
dhmA
Haloalkane dehalogenase, putative; Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.
 
    0.714
CC_1177
Hypothetical protein; Identified by Glimmer2; putative.
       0.620
CC_2961
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.581
CC_2494
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
  
    0.553
CC_1172
Identified by match to protein family HMM.
 
  
 0.540
CC_1171
2-hydroxychromene-2-carboxylate dehydrogenase, putative; Similar to GP:4104759; identified by sequence similarity; putative.
 
    0.528
CC_0063
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
  
    0.513
CC_1232
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.467
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.465
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.