STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1184Amino acid permease family protein; Identified by match to PFAM protein family HMM PF00324. (546 aa)    
Predicted Functional Partners:
CC_1135
Amylosucrase; Identified by match to protein family HMM.
   
 0.715
CC_2285
Identified by match to protein family HMM.
   
 0.715
CC_2286
Identified by match to protein family HMM.
   
 0.715
CC_1183
Identified by match to protein family HMM.
  
  
 0.688
CC_1185
Helicase, putative; Identified by match to protein family HMM.
     
 0.568
CC_1181
Sensor histidine kinase; Identified by match to protein family HMM.
  
  
 0.495
CC_1182
DNA-binding response regulator; Identified by match to protein family HMM.
     
 0.488
CC_1180
Hypothetical protein; Identified by Glimmer2; putative.
       0.448
CC_0263
Identified by match to PFAM protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
 
 0.436
lipA
Lipoic acid synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
   
 0.430
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.