node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_1185 | CC_1639 | CC_1185 | CC_1639 | Helicase, putative; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.915 |
CC_1185 | CC_3603 | CC_1185 | CC_3603 | Helicase, putative; Identified by match to protein family HMM. | Ribonuclease D, putative; Identified by match to protein family HMM. | 0.832 |
CC_1185 | RpsA | CC_1185 | CC_3587 | Helicase, putative; Identified by match to protein family HMM. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.956 |
CC_1185 | fusA | CC_1185 | CC_3200 | Helicase, putative; Identified by match to protein family HMM. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.772 |
CC_1185 | rnd | CC_1185 | CC_1704 | Helicase, putative; Identified by match to protein family HMM. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.866 |
CC_1185 | rph | CC_1185 | CC_0152 | Helicase, putative; Identified by match to protein family HMM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.812 |
CC_1185 | rpsD | CC_1185 | CC_2511 | Helicase, putative; Identified by match to protein family HMM. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.946 |
CC_1185 | rpsE | CC_1185 | CC_1265 | Helicase, putative; Identified by match to protein family HMM. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.859 |
CC_1185 | rpsK | CC_1185 | CC_1271 | Helicase, putative; Identified by match to protein family HMM. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.935 |
CC_1185 | rpsQ | CC_1185 | CC_1257 | Helicase, putative; Identified by match to protein family HMM. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.796 |
CC_1639 | CC_1185 | CC_1639 | CC_1185 | Identified by match to protein family HMM. | Helicase, putative; Identified by match to protein family HMM. | 0.915 |
CC_3603 | CC_1185 | CC_3603 | CC_1185 | Ribonuclease D, putative; Identified by match to protein family HMM. | Helicase, putative; Identified by match to protein family HMM. | 0.832 |
CC_3603 | RpsA | CC_3603 | CC_3587 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.888 |
CC_3603 | rph | CC_3603 | CC_0152 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.922 |
CC_3603 | rpsD | CC_3603 | CC_2511 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.851 |
CC_3603 | rpsE | CC_3603 | CC_1265 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.574 |
CC_3603 | rpsK | CC_3603 | CC_1271 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.840 |
CC_3603 | rpsQ | CC_3603 | CC_1257 | Ribonuclease D, putative; Identified by match to protein family HMM. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.694 |
RpsA | CC_1185 | CC_3587 | CC_1185 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Helicase, putative; Identified by match to protein family HMM. | 0.956 |
RpsA | CC_3603 | CC_3587 | CC_3603 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease D, putative; Identified by match to protein family HMM. | 0.888 |