STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1201Class II aldolase/adducin domain protein; Identified by match to protein family HMM. (300 aa)    
Predicted Functional Partners:
CC_3659
Citrate lyase beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
   
    0.788
CC_2999
Citrate lyase, beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
   
    0.779
CC_1202
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.677
CC_1198
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.566
CC_1199
Membrane protein, putative; Similar to GP:6002225; identified by sequence similarity; putative.
       0.566
CC_1200
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.566
CC_2263
Sugar isomerase, KpsF/GutQ; Identified by match to protein family HMM; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.522
CC_1632
Identified by match to protein family HMM.
 
 
 0.513
CC_1210
Identified by match to protein family HMM.
 
 
 0.499
CC_1639
Identified by match to protein family HMM.
    
 0.479
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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