STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1210Identified by match to protein family HMM. (155 aa)    
Predicted Functional Partners:
CC_2935
Cytochrome c, membrane-bound; Identified by match to protein family HMM.
 
  
 
0.988
CC_0472
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.967
CC_0474
Ubiquinol-cytochrome c reductase, cytochrome c1; Identified by match to PFAM protein family HMM PF02167.
 
 0.966
CC_0473
Ubiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.960
CC_1632
Identified by match to protein family HMM.
  
  
 
0.915
coq7
Coq7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
 
 0.845
ctaG
Cytochrome c oxidase assembly protein, putative; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
  
  
 0.781
CC_1736
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.760
CC_1243
cbbBc protein; Identified by match to protein family HMM; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.752
CC_3529
Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127.
  
 
 0.721
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.