STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1233Conserved hypothetical protein; Identified by Glimmer2; putative. (317 aa)    
Predicted Functional Partners:
CC_1232
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.820
CC_0690
Identified by match to PFAM protein family HMM PF00441.
 
 
 0.810
CC_1234
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CC_1219
Oxidoreductase, FAD-binding; Identified by match to protein family HMM.
  
   0.641
CC_2016
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.
 
    0.541
CC_0096
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.
 
   0.540
CC_1813
Identified by match to PFAM protein family HMM PF00378.
 
 
 0.499
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
 
 
 0.492
CC_3076
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.470
CC_0774
Monooxygenase, flavin-binding family; Identified by match to PFAM protein family HMM PF00743.
  
    0.460
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.