STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1277Identified by match to PFAM protein family HMM PF01663. (451 aa)    
Predicted Functional Partners:
CC_1278
Oxidoreductase, GMC family; Identified by match to PFAM protein family HMM PF00732.
       0.572
CC_3107
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
  
  
  0.570
CC_0540
alpha-N-acetylglucosaminidase; Similar to GB:U43572 GB:L78464 SP:P54802 PID:1171229 PID:1171231; identified by sequence similarity; putative.
  
  0.562
CC_1276
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
     
 0.558
CC_1275
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.556
CC_2840
Hypothetical protein; Identified by Glimmer2; putative.
  
  
  0.556
nadE
NAD(+) synthetase, putative; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.527
CC_1666
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.520
CC_1970
TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.
  
     0.511
CC_1737
Competence/damage-inducible protein CinA; Identified by match to protein family HMM; Belongs to the CinA family.
     
  0.499
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.