STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1285Hypothetical protein; Identified by Glimmer2; putative. (178 aa)    
Predicted Functional Partners:
CC_1283
ATPase, AAA family; Identified by match to protein family HMM.
       0.774
CC_1284
Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM.
       0.773
CC_2071
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.556
CC_0898
Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.550
flaEY
Regulatory protein FlaEY; Functions in trans to modulate the level of transcription of the flagellin genes and several genes encoding chemotaxis functions. It is itself temporally controlled.
  
     0.533
CC_0112
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.510
CC_0335
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.509
CC_1282
Serine protease; Identified by match to protein family HMM; Belongs to the peptidase S1C family.
       0.504
CC_0178
General secretion pathway protein I; Similar to GB:M80792 SP:Q00516 GB:X62666 PID:151469 PID:45438; identified by sequence similarity; putative.
  
     0.474
CC_0330
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.471
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.