STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1287Outer membrane protein OmpW, putative; Similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity; putative. (226 aa)    
Predicted Functional Partners:
CC_1288
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.790
CC_1411
Oxygen-independent coproporphyrinogen III oxidase; Identified by match to TIGR protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.749
CC_1402
Cytochrome c oxidase, CcoO subunit; Identified by match to TIGR protein family HMM TIGR00781.
 
    0.719
CC_1405
Ferredoxin, putative; Identified by match to protein family HMM.
 
    0.641
CC_3416
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.623
CC_1401
Cytochrome c oxidase, CcoN subunit; Identified by match to TIGR protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.621
CC_1289
Hypothetical protein; Identified by Glimmer2; putative.
       0.605
CC_1404
Cytochrome c oxidase, CcoP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.537
CC_1290
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.534
CC_1286
Gluconate 5-dehydrogenase; Identified by match to protein family HMM.
       0.451
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.