STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_12953-phytase, fusion, putative; Identified by match to protein family HMM. (682 aa)    
Predicted Functional Partners:
CC_0542
Periplasmic phosphoanhydride phosphohydrolase; Identified by match to protein family HMM.
   
 
  0.900
CC_3272
Glycerophosphoryl diester phosphodiesterase; Similar to SP:P09394 GB:X56907 GB:Y00536 PID:41581 PID:902489; identified by sequence similarity; putative.
 
    0.817
CC_0571
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.731
CC_1113
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
    0.731
CC_1791
TonB-dependent receptor; Similar to GP:9654902; identified by sequence similarity; putative.
    0.717
CC_0563
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.679
CC_1131
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
     0.675
CC_0539
TonB-dependent receptor; Identified by Glimmer2; putative.
 
    0.670
CC_0995
TonB-dependent receptor, putative; Identified by Glimmer2; putative.
    0.642
CC_0442
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.579
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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