STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1303Hypothetical protein; Identified by Glimmer2; putative. (135 aa)    
Predicted Functional Partners:
CC_1305
Sensor histidine kinase; Identified by match to protein family HMM.
 
  
 0.924
CC_1304
DNA-binding response regulator; Identified by match to protein family HMM.
 
  
 0.911
CC_3571
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.543
CC_1302
Methylmalonate-semialdehyde dehydrogenase, putative; Identified by match to protein family HMM.
   
   0.536
CC_2765
Sensor histidine kinase; Identified by match to protein family HMM.
 
  
 0.444
CC_1298
iolC protein; Identified by match to protein family HMM.
       0.436
CC_1299
iolD protein; Identified by match to protein family HMM; Belongs to the TPP enzyme family.
       0.436
CC_1300
iolE protein; Similar to SP:P42416 PID:709985 GB:AL009126; identified by sequence similarity; putative.
       0.436
CC_1301
iolB protein; Similar to SP:P42413 PID:709982 PID:904208 PID:2280501 GB:AL009126; identified by sequence similarity; putative.
       0.436
CC_2549
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.414
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.