STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1305Sensor histidine kinase; Identified by match to protein family HMM. (438 aa)    
Predicted Functional Partners:
CC_1304
DNA-binding response regulator; Identified by match to protein family HMM.
 
 
 0.939
CC_1303
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.924
CC_2766
DNA-binding response regulator; Identified by match to protein family HMM.
 
 
 0.811
CC_1293
DNA-binding response regulator; Identified by match to protein family HMM.
 
 
 0.527
ctrA
Cell cycle transcriptional regulator CtrA; Forms part of a two-component regulatory system CtrA/CckA that controls multiple events in the cell cycle, including cell division, stalk synthesis and cell cycle-specific transcription. Binds to a group of cell cycle-regulated promoters critical for DNA replication, DNA methylation, and class II flagellar biogenesis.
 
 
 0.526
CC_2757
DNA-binding response regulator; Identified by match to protein family HMM.
 
 
 0.506
dusA
TIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.462
CC_1302
Methylmalonate-semialdehyde dehydrogenase, putative; Identified by match to protein family HMM.
   
   0.461
CC_1595
Transcriptional regulator KdpE; Identified by match to protein family HMM.
 
 
 0.451
CC_3471
Chemotaxis protein CheYIV; Identified by match to protein family HMM.
 
 
 0.451
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.