STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1327Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209. (355 aa)    
Predicted Functional Partners:
CC_1326
RNA methyltransferase, TrmA family; Identified by match to protein family HMM; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.777
CC_1328
Acyltransferase, putative; Identified by match to protein family HMM.
       0.618
CC_1325
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.578
CC_0495
Transcriptional regulator, TetR family, putative; Identified by match to protein family HMM.
  
   0.511
CC_3312
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.471
CC_1329
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family.
       0.457
CC_1846
Methyltransferase, putative; Identified by match to protein family HMM.
  
     0.447
CC_3730
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.438
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.426
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.