CC_1332 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1332

Transglycosylase, putative; Identified by match to protein family HMM. (541 aa)

Predicted Functional Partners:

CC_1333

0.716

dipM

0.683

CC_2038

0.652

CC_1546

0.640

rodZ

0.596

CC_1334

0.550

fliE

0.502

fliI

0.502

CC_1544

0.497

mrdB

0.489

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_1332	CC_1333	CC_1332	CC_1333	Transglycosylase, putative; Identified by match to protein family HMM.	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	0.716
CC_1332	CC_1334	CC_1332	CC_1334	Transglycosylase, putative; Identified by match to protein family HMM.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.550
CC_1332	CC_1544	CC_1332	CC_1544	Transglycosylase, putative; Identified by match to protein family HMM.	Rod shape-determining protein MreC; Identified by match to protein family HMM.	0.497
CC_1332	CC_1546	CC_1332	CC_1546	Transglycosylase, putative; Identified by match to protein family HMM.	Penicillin-binding protein 2; Identified by match to protein family HMM.	0.640
CC_1332	CC_2038	CC_1332	CC_2038	Transglycosylase, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.652
CC_1332	dipM	CC_1332	CC_1996	Transglycosylase, putative; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.683
CC_1332	fliE	CC_1332	CC_0955	Transglycosylase, putative; Identified by match to protein family HMM.	Flagellar hook-basal body complex protein FliE; Identified by match to TIGR protein family HMM TIGR00205.	0.502
CC_1332	fliI	CC_1332	CC_3040	Transglycosylase, putative; Identified by match to protein family HMM.	Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum.	0.502
CC_1332	mrdB	CC_1332	CC_1547	Transglycosylase, putative; Identified by match to protein family HMM.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.489
CC_1332	rodZ	CC_1332	CC_3764	Transglycosylase, putative; Identified by match to protein family HMM.	RodZ.	0.596
CC_1333	CC_1332	CC_1333	CC_1332	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Transglycosylase, putative; Identified by match to protein family HMM.	0.716
CC_1333	CC_1334	CC_1333	CC_1334	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.601
CC_1334	CC_1332	CC_1334	CC_1332	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Transglycosylase, putative; Identified by match to protein family HMM.	0.550
CC_1334	CC_1333	CC_1334	CC_1333	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	0.601
CC_1544	CC_1332	CC_1544	CC_1332	Rod shape-determining protein MreC; Identified by match to protein family HMM.	Transglycosylase, putative; Identified by match to protein family HMM.	0.497
CC_1544	CC_1546	CC_1544	CC_1546	Rod shape-determining protein MreC; Identified by match to protein family HMM.	Penicillin-binding protein 2; Identified by match to protein family HMM.	0.979
CC_1544	CC_2038	CC_1544	CC_2038	Rod shape-determining protein MreC; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.408
CC_1544	mrdB	CC_1544	CC_1547	Rod shape-determining protein MreC; Identified by match to protein family HMM.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.964
CC_1544	rodZ	CC_1544	CC_3764	Rod shape-determining protein MreC; Identified by match to protein family HMM.	RodZ.	0.695
CC_1546	CC_1332	CC_1546	CC_1332	Penicillin-binding protein 2; Identified by match to protein family HMM.	Transglycosylase, putative; Identified by match to protein family HMM.	0.640