STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1333Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758. (273 aa)    
Predicted Functional Partners:
CC_1549
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.956
CC_2333
Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.
  
  
 
0.926
CC_1332
Transglycosylase, putative; Identified by match to protein family HMM.
   
   0.716
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
    
 0.663
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.623
CC_1334
Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.
       0.601
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.595
CC_3434
Peptidase, M23/M37 family; Identified by match to protein family HMM.
   
   0.507
CC_0059
Identified by match to protein family HMM.
  
    0.454
CC_1335
TPR domain protein; Identified by match to protein family HMM.
       0.454
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.