STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1334Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone. (558 aa)    
Predicted Functional Partners:
CC_0726
Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.
 
 0.999
CC_0727
Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.
 
 0.999
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
      
 0.826
SdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
  
 0.820
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
      
 0.772
CC_0555
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.741
CC_3441
Identified by match to protein family HMM.
  
  
 0.736
CC_2207
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.731
CC_1813
Identified by match to PFAM protein family HMM PF00378.
  
 
 0.717
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 
 0.717
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.