CC_1335 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1335

TPR domain protein; Identified by match to protein family HMM. (576 aa)

Predicted Functional Partners:

ispE

0.715

CC_1337

0.697

CC_1334

0.650

CC_1742

0.549

CC_3434

0.529

polA

0.475

CC_1333

0.454

CC_1332

0.446

tolB

0.438

CC_1078

0.420

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_1078	CC_1335	CC_1078	CC_1335	Cell cycle histidine kinase CckA; Identified by match to protein family HMM.	TPR domain protein; Identified by match to protein family HMM.	0.420
CC_1332	CC_1333	CC_1332	CC_1333	Transglycosylase, putative; Identified by match to protein family HMM.	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	0.716
CC_1332	CC_1334	CC_1332	CC_1334	Transglycosylase, putative; Identified by match to protein family HMM.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.550
CC_1332	CC_1335	CC_1332	CC_1335	Transglycosylase, putative; Identified by match to protein family HMM.	TPR domain protein; Identified by match to protein family HMM.	0.446
CC_1333	CC_1332	CC_1333	CC_1332	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Transglycosylase, putative; Identified by match to protein family HMM.	0.716
CC_1333	CC_1334	CC_1333	CC_1334	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.601
CC_1333	CC_1335	CC_1333	CC_1335	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	TPR domain protein; Identified by match to protein family HMM.	0.454
CC_1333	CC_3434	CC_1333	CC_3434	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.507
CC_1333	ispE	CC_1333	CC_1336	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	Kinase, GHMP family, group 2; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	0.422
CC_1334	CC_1332	CC_1334	CC_1332	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Transglycosylase, putative; Identified by match to protein family HMM.	0.550
CC_1334	CC_1333	CC_1334	CC_1333	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	0.601
CC_1334	CC_1335	CC_1334	CC_1335	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	TPR domain protein; Identified by match to protein family HMM.	0.650
CC_1334	CC_1337	CC_1334	CC_1337	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.504
CC_1334	ispE	CC_1334	CC_1336	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Kinase, GHMP family, group 2; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	0.647
CC_1335	CC_1078	CC_1335	CC_1078	TPR domain protein; Identified by match to protein family HMM.	Cell cycle histidine kinase CckA; Identified by match to protein family HMM.	0.420
CC_1335	CC_1332	CC_1335	CC_1332	TPR domain protein; Identified by match to protein family HMM.	Transglycosylase, putative; Identified by match to protein family HMM.	0.446
CC_1335	CC_1333	CC_1335	CC_1333	TPR domain protein; Identified by match to protein family HMM.	Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.	0.454
CC_1335	CC_1334	CC_1335	CC_1334	TPR domain protein; Identified by match to protein family HMM.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.650
CC_1335	CC_1337	CC_1335	CC_1337	TPR domain protein; Identified by match to protein family HMM.	Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.697
CC_1335	CC_1742	CC_1335	CC_1742	TPR domain protein; Identified by match to protein family HMM.	Nitrogen regulation protein NtrY; Identified by match to protein family HMM.	0.549