Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_1338 | CC_1339 | CC_1338 | CC_1339 | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | 0.998 |
| CC_1338 | CC_1740 | CC_1338 | CC_1740 | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | 0.718 |
| CC_1338 | CC_3607 | CC_1338 | CC_3607 | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.766 |
| CC_1338 | glnD | CC_1338 | CC_0013 | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | [protein-pII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.461 |
| CC_1338 | nadE | CC_1338 | CC_3619 | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | NAD(+) synthetase, putative; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.483 |
| CC_1339 | CC_1338 | CC_1339 | CC_1338 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | 0.998 |
| CC_1339 | CC_1340 | CC_1339 | CC_1340 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.429 |
| CC_1339 | CC_1740 | CC_1339 | CC_1740 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | 0.732 |
| CC_1339 | CC_1863 | CC_1339 | CC_1863 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.483 |
| CC_1339 | CC_2058 | CC_1339 | CC_2058 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.729 |
| CC_1339 | CC_3509 | CC_1339 | CC_3509 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.439 |
| CC_1339 | CC_3607 | CC_1339 | CC_3607 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.498 |
| CC_1339 | argB | CC_1339 | CC_0283 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.733 |
| CC_1339 | glnD | CC_1339 | CC_0013 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | [protein-pII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.645 |
| CC_1339 | nadE | CC_1339 | CC_3619 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | NAD(+) synthetase, putative; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.476 |
| CC_1340 | CC_1339 | CC_1340 | CC_1339 | Hypothetical protein; Identified by Glimmer2; putative. | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | 0.429 |
| CC_1740 | CC_1338 | CC_1740 | CC_1338 | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836. | 0.718 |
| CC_1740 | CC_1339 | CC_1740 | CC_1339 | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | 0.732 |
| CC_1740 | CC_3607 | CC_1740 | CC_3607 | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.409 |
| CC_1740 | glnD | CC_1740 | CC_0013 | Nitrogen regulation protein NR(II); Identified by match to protein family HMM. | [protein-pII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.550 |
page 1 of 2