Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_1339 | CC_1340 | CC_1339 | CC_1340 | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.429 |
CC_1340 | CC_1339 | CC_1340 | CC_1339 | Hypothetical protein; Identified by Glimmer2; putative. | Nitrogen regulatory protein P-II 2; Identified by match to protein family HMM; Belongs to the P(II) protein family. | 0.429 |
CC_1340 | glyQ | CC_1340 | CC_1341 | Hypothetical protein; Identified by Glimmer2; putative. | glycyl-tRNA synthetase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00388. | 0.572 |
CC_1340 | glyS | CC_1340 | CC_1342 | Hypothetical protein; Identified by Glimmer2; putative. | glycyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00211. | 0.572 |
glyQ | CC_1340 | CC_1341 | CC_1340 | glycyl-tRNA synthetase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00388. | Hypothetical protein; Identified by Glimmer2; putative. | 0.572 |
glyQ | glyS | CC_1341 | CC_1342 | glycyl-tRNA synthetase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00388. | glycyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00211. | 0.999 |
glyS | CC_1340 | CC_1342 | CC_1340 | glycyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00211. | Hypothetical protein; Identified by Glimmer2; putative. | 0.572 |
glyS | glyQ | CC_1342 | CC_1341 | glycyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00211. | glycyl-tRNA synthetase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00388. | 0.999 |