STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1345Transcriptional regulator, TetR family; Identified by match to protein family HMM. (192 aa)    
Predicted Functional Partners:
CC_1344
FF domain protein; Identified by match to protein family HMM.
 
     0.849
CC_3759
Quinone oxidoreductase; Identified by match to protein family HMM.
   
  
 0.734
nadA
Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
      
 0.722
CC_3309
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.672
tatB
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
      
 0.611
CC_1232
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.598
CC_3144
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.546
CC_0511
acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.518
CC_2127
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
CC_2087
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.481
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.