STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1352Identified by match to PFAM protein family HMM PF00378. (350 aa)    
Predicted Functional Partners:
CC_1354
3-hydroxyisobutyrate dehydrogenase; Identified by match to protein family HMM; Belongs to the HIBADH-related family.
 
 0.990
CC_1851
Identified by match to PFAM protein family HMM PF00378.
 
0.951
CC_1350
acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
 
 0.947
CC_2172
isovaleryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
  
 0.945
CC_0427
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
  
 0.944
CC_1798
acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
  
 0.944
CC_0704
Identified by match to protein family HMM.
  
 0.935
CC_3498
Identified by match to protein family HMM.
  
 0.934
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
0.930
CC_0715
3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.
 
 0.928
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.