STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GlpXglpX protein; Identified by match to TIGR protein family HMM TIGR00330. (317 aa)    
Predicted Functional Partners:
CC_3620
Identified by match to TIGR protein family HMM TIGR00232; Belongs to the transketolase family.
 
 
 0.974
fbp
Fructose-1,6-bisphosphatase; Identified by match to protein family HMM.
  
 
 0.973
CC_3250
Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
  
 
 0.937
tal
Transaldolase family protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.936
pgi
Glucose-6-phosphate isomerase; Identified by match to protein family HMM.
    
 0.929
CC_1134
Fructokinase; Identified by match to protein family HMM.
     
 0.909
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
   
  
 0.851
CC_1383
Homoserine dehydrogenase; Identified by match to PFAM protein family HMM PF00742.
  
    0.630
leuS
leucyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
    0.612
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
   
  
 0.601
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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