STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1420Transcriptional regulator, GntR family; Identified by match to protein family HMM. (248 aa)    
Predicted Functional Partners:
CC_0884
Transcriptional regulator, putative; Identified by match to protein family HMM.
 
  
 0.763
CC_2661
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.763
CC_1776
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.749
CC_2392
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.719
CC_1419
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.674
CC_1421
Dehydratase, IlvD/Edd family; Identified by match to PFAM protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
     0.569
CC_0785
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.528
CC_0536
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
    0.479
CC_0445
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
    0.462
CC_1418
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.452
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.