STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1425Identified by match to protein family HMM. (285 aa)    
Predicted Functional Partners:
CC_1424
Cystathionine beta-lyase; Identified by match to PFAM protein family HMM PF01053.
 
 
 0.988
CC_1119
Sulfite reductase (NADPH) hemoprotein beta-component; Identified by match to protein family HMM.
    
 0.935
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
  
 0.935
CC_3063
Sulfite reductase (NADPH) flavoprotein alpha-component; Identified by match to protein family HMM.
    
 0.932
CC_1426
Cysteine synthase; Identified by match to protein family HMM.
  
 
 0.931
CC_1121
Phospho-adenylylsulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 0.921
CC_1534
Aspartate aminotransferase; Identified by match to protein family HMM.
     
 0.906
CC_3625
Cysteine synthase; Identified by match to protein family HMM.
  
 
 0.848
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 
 0.833
CC_3674
Thiol:disulfide interchange protein CycY; Identified by match to protein family HMM.
  
 
 0.682
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.