STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1428Deoxyribodipyrimidine photolyase - classI; Identified by match to protein family HMM; Belongs to the DNA photolyase family. (483 aa)    
Predicted Functional Partners:
CC_1427
Cyclopropane-fatty-acyl-phospholipid synthase; Similar to GB:M98330 SP:P30010 PID:145514 GB:U00096 PID:1742735; identified by sequence similarity; putative.
 
   
 0.716
CC_0646
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.622
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.608
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.608
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Similar to SP:Q46225 PID:1359596; identified by sequence similarity; putative; Belongs to the KdsA family.
       0.568
hldD
ADP-L-glycero-D-mannoheptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
     
 0.565
CC_3260
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.557
CC_2600
Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.
 
  
 0.468
CC_1426
Cysteine synthase; Identified by match to protein family HMM.
   
   0.450
CC_1777
Superoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.432
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.