STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1447Conserved hypothetical protein; Identified by Glimmer2; putative. (139 aa)    
Predicted Functional Partners:
CC_1448
DedA family protein; Identified by match to TIGR protein family HMM TIGR00786.
 
 
 0.992
CC_1446
TRAP dicarboxylate transporter, DctP subunit family; Identified by match to protein family HMM.
 
  
 0.961
uxaC
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.614
CC_1509
2-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM.
 
     0.530
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
    0.474
CC_1488
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.414
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.