STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1456Flagellin modification protein FlmH; Identified by match to protein family HMM. (196 aa)    
Predicted Functional Partners:
CC_2854
Flagellin modification protein FlmD; Similar to PID:903375; identified by sequence similarity; putative.
  
 0.915
CC_2868
neuB protein, putative; Similar to GB:U05248 PID:454081; identified by sequence similarity; putative.
 
  
 0.684
CC_0233
Flagellin modification protein FlmA; Identified by match to protein family HMM.
 
   
 0.544
CC_1455
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.525
flbA
Flagellin modification protein FlmG; Identified by match to protein family HMM.
       0.492
CC_3575
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.459
CC_2853
Flagellin modification protein FlmC; Identified by match to protein family HMM.
 
    0.456
CC_1048
Identified by match to PFAM protein family HMM PF00326.
  
   
 0.445
CC_0234
Flagellin modification protein FlmB; Identified by match to PFAM protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.432
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.431
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.