STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_15092-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM. (272 aa)    
Predicted Functional Partners:
CC_1508
Major facilitator family transporter; Identified by match to protein family HMM.
  
    0.720
CC_0442
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.707
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.673
CC_0446
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.593
CC_2958
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.572
CC_0483
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
CC_0799
Para-nitrobenzyl esterase; Identified by match to protein family HMM; Belongs to the type-B carboxylesterase/lipase family.
 
     0.544
CC_2924
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.531
CC_1447
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.530
CC_2832
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.518
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.