STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1550Conserved hypothetical protein; Identified by Glimmer2; putative. (198 aa)    
Predicted Functional Partners:
CC_1549
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.812
CC_1551
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to PFAM protein family HMM PF01288.
       0.611
trmB
Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.587
CC_0520
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.583
staR
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
  
     0.504
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
   
   0.502
CC_1451
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.459
CC_3164
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
  
     0.429
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.425
CC_0043
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.423
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.