STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1571Gluconate 5-dehydrogenase; Identified by match to protein family HMM. (255 aa)    
Predicted Functional Partners:
CC_3175
Short chain dehydrogenase family protein; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.782
CC_1570
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.774
CC_2966
Short chain dehydrogenase family protein; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.771
CC_1569
NADP-dependent quinone oxidoreductase, putative; Identified by match to protein family HMM.
  
   0.768
CC_1803
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by match to protein family HMM.
 
     0.766
CC_2093
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.764
CC_1568
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.684
CC_2861
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.654
CC_1223
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.610
CC_2337
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.556
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.