CC_1628 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1628

Membrane protein, putative; Identified by match to protein family HMM. (413 aa)

Predicted Functional Partners:

CC_1630

0.949

CC_1631

0.947

CC_1629

0.920

CC_1632

0.804

CC_1633

0.712

CC_1635

0.654

CC_1226

0.644

CC_1634

0.610

CC_2023

0.596

CC_1133

0.583

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_1133	CC_1628	Transporter, putative; Identified by match to protein family HMM.	Membrane protein, putative; Identified by match to protein family HMM.	0.583
CC_1133	CC_1630	Transporter, putative; Identified by match to protein family HMM.	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.	0.755
CC_1133	CC_1631	Transporter, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.744
CC_1133	CC_1632	Transporter, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.730
CC_1226	CC_1628	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by match to protein family HMM.	0.644
CC_1226	CC_1629	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.432
CC_1226	CC_1633	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.688
CC_1226	CC_2023	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.720
CC_1628	CC_1133	Membrane protein, putative; Identified by match to protein family HMM.	Transporter, putative; Identified by match to protein family HMM.	0.583
CC_1628	CC_1226	Membrane protein, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.644
CC_1628	CC_1629	Membrane protein, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.920
CC_1628	CC_1630	Membrane protein, putative; Identified by match to protein family HMM.	Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.	0.949
CC_1628	CC_1631	Membrane protein, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.947
CC_1628	CC_1632	Membrane protein, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.804
CC_1628	CC_1633	Membrane protein, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.712
CC_1628	CC_1634	Membrane protein, putative; Identified by match to protein family HMM.	Oxidoreductase, GMC family; Identified by match to protein family HMM.	0.610
CC_1628	CC_1635	Membrane protein, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.654
CC_1628	CC_2023	Membrane protein, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.596
CC_1629	CC_1226	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.432
CC_1629	CC_1628	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by match to protein family HMM.	0.920