STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1641Hypothetical protein; Identified by Glimmer2; putative. (192 aa)    
Predicted Functional Partners:
CC_1642
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the ArsC family.
       0.656
CC_1639
Identified by match to protein family HMM.
  
    0.562
CC_1640
Transcriptional regulator, BlaI family; Similar to GB:M14734 SP:P06555 GB:M22352 GB:M22353 PID:143294; identified by sequence similarity; putative.
  
    0.556
CC_1643
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
       0.496
CC_0483
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
CC_1644
Hypothetical protein; Identified by Glimmer2; putative.
       0.427
CC_1646
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.425
CC_1645
Hypothetical protein; Identified by Glimmer2; putative.
       0.415
CC_1647
Hypothetical protein; Identified by Glimmer2; putative.
       0.415
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.410
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.