STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1643Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702. (246 aa)    
Predicted Functional Partners:
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
  
 
  0.939
CC_3722
D-isomer specific 2-hydroxyacid dehydrogenases family protein; Identified by match to PFAM protein family HMM PF00389; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.902
CC_1644
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
CC_1646
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.632
CC_1645
Hypothetical protein; Identified by Glimmer2; putative.
       0.630
CC_1647
Hypothetical protein; Identified by Glimmer2; putative.
       0.630
CC_1642
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the ArsC family.
  
    0.618
queG
Iron-sulfur-binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
    
 0.547
CC_0101
Ribulose-phosphate 3-epimerase; Identified by match to PFAM protein family HMM PF00834; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.538
CC_1641
Hypothetical protein; Identified by Glimmer2; putative.
       0.496
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.