Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_1652Hypothetical protein; Identified by Glimmer2; putative. (250 aa)    
Predicted Functional Partners:
CC_1653
PQQ enzyme repeat family protein; Identified by match to protein family HMM.
  
    0.832
CC_1367
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.759
CC_3010
Identified by match to protein family HMM.
  
   
 0.743
CC_1035
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.741
CC_1725
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.718
CC_2637
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.710
CC_3115
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.705
HolA
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.702
CC_2323
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.697
CC_1485
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.692
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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