STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1656Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM. (251 aa)    
Predicted Functional Partners:
CC_1659
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.807
CC_3175
Short chain dehydrogenase family protein; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.779
CC_1803
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by match to protein family HMM.
  
     0.754
CC_0094
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
     0.723
CC_2836
3-oxoacyl-(acyl-carrier protein) reductase; Identified by match to protein family HMM.
  
     0.722
CC_0511
acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.711
CC_2655
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
  
     0.696
CC_0246
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
     0.692
CC_0133
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.658
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.652
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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