CC_1672 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CC_1672

Transcriptional regulator, AraC family; Identified by match to protein family HMM. (370 aa)

Predicted Functional Partners:

CC_1671

0.825

CC_1673

0.572

CC_2894

0.551

CC_1079

0.485

CC_0649

0.484

CC_3039

0.463

rpoA

0.402

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0649	CC_1079	CC_0649	CC_1079	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.475
CC_0649	CC_1671	CC_0649	CC_1671	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF01598.	0.652
CC_0649	CC_1672	CC_0649	CC_1672	Hypothetical protein; Identified by Glimmer2; putative.	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	0.484
CC_0649	CC_2894	CC_0649	CC_2894	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF02105.	0.629
CC_1079	CC_0649	CC_1079	CC_0649	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.475
CC_1079	CC_1672	CC_1079	CC_1672	Hypothetical protein; Identified by Glimmer2; putative.	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	0.485
CC_1671	CC_0649	CC_1671	CC_0649	Identified by match to PFAM protein family HMM PF01598.	Hypothetical protein; Identified by Glimmer2; putative.	0.652
CC_1671	CC_1672	CC_1671	CC_1672	Identified by match to PFAM protein family HMM PF01598.	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	0.825
CC_1671	CC_1673	CC_1671	CC_1673	Identified by match to PFAM protein family HMM PF01598.	Bacterioferritin comigratory protein, putative; Identified by match to PFAM protein family HMM PF00578.	0.452
CC_1671	CC_2894	CC_1671	CC_2894	Identified by match to PFAM protein family HMM PF01598.	Identified by match to PFAM protein family HMM PF02105.	0.545
CC_1672	CC_0649	CC_1672	CC_0649	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.484
CC_1672	CC_1079	CC_1672	CC_1079	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.485
CC_1672	CC_1671	CC_1672	CC_1671	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF01598.	0.825
CC_1672	CC_1673	CC_1672	CC_1673	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Bacterioferritin comigratory protein, putative; Identified by match to PFAM protein family HMM PF00578.	0.572
CC_1672	CC_2894	CC_1672	CC_2894	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF02105.	0.551
CC_1672	CC_3039	CC_1672	CC_3039	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.463
CC_1672	rpoA	CC_1672	CC_1272	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.402
CC_1673	CC_1671	CC_1673	CC_1671	Bacterioferritin comigratory protein, putative; Identified by match to PFAM protein family HMM PF00578.	Identified by match to PFAM protein family HMM PF01598.	0.452
CC_1673	CC_1672	CC_1673	CC_1672	Bacterioferritin comigratory protein, putative; Identified by match to PFAM protein family HMM PF00578.	Transcriptional regulator, AraC family; Identified by match to protein family HMM.	0.572
CC_2894	CC_0649	CC_2894	CC_0649	Identified by match to PFAM protein family HMM PF02105.	Hypothetical protein; Identified by Glimmer2; putative.	0.629