STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1673Bacterioferritin comigratory protein, putative; Identified by match to PFAM protein family HMM PF00578. (177 aa)    
Predicted Functional Partners:
CC_0217
Thio:disulfide interchange protein, putative; Identified by match to protein family HMM.
 
   
 0.816
CC_2210
Thiol:disulfide interchange protein, putative; Identified by match to protein family HMM.
  
  
 0.751
CC_0030
Identified by match to protein family HMM; Belongs to the RNase T2 family.
      
 0.722
CC_2196
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.609
CC_0375
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.606
CC_0374
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.605
CC_1672
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
       0.572
CC_1674
Malonyl CoA-acyl carrier protein transacylase; Identified by match to TIGR protein family HMM TIGR00128.
       0.530
CC_1675
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.487
CC_2918
Alkyl hydroperoxide reductase, subunit c; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.487
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.