STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1683Sensor histidine kinase, putative; Similar to GP:2808506; identified by sequence similarity; putative. (555 aa)    
Predicted Functional Partners:
lovK
LOV histidine kinase LovK; Identified by match to protein family HMM.
 
     0.821
CC_0598
Chemotaxis protein methyltransferase CheR; Identified by match to protein family HMM.
 
      0.806
CC_3477
Response regulator; Identified by match to protein family HMM.
 
   
 0.799
CC_3015
Response regulator; Identified by match to protein family HMM.
 
     0.781
CC_0630
Response regulator; Identified by match to protein family HMM.
 
     0.780
lovR
Response regulator LovR; Identified by match to protein family HMM.
  
     0.762
CC_3474
Sensor histidine kinase, putative; Identified by match to protein family HMM.
  
     0.761
CC_2576
Response regulator; Identified by match to protein family HMM.
 
     0.715
CC_3475
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.669
CC_2883
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.639
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.