STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1750TonB-dependent receptor; Identified by match to protein family HMM. (650 aa)    
Predicted Functional Partners:
CC_1191
Iron compound ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM.
 
  
 0.730
CC_1192
Iron compound ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.725
CC_3231
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.699
CC_2327
TonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.
   
 
 0.696
CC_2709
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.615
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
     
 0.609
CC_3336
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
   
 0.553
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.503
CC_1722
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.451
CC_0983
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.446
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.