CC_1754 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

CC_1754

TonB-dependent receptor; Identified by match to protein family HMM. (953 aa)

Predicted Functional Partners:

CC_1755

0.886

CC_0562

0.780

CC_2806

0.749

CC_2288

0.740

CC_0972

0.739

CC_0971

0.736

CC_0787

0.727

CC_2807

0.726

CC_2808

0.722

CC_2805

0.721

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0562	CC_1754	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.780
CC_0787	CC_1754	Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.727
CC_0971	CC_0972	Tryptophan halogenase, putative; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.783
CC_0971	CC_1754	Tryptophan halogenase, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.736
CC_0972	CC_0971	Tryptophan halogenase, putative; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.783
CC_0972	CC_1754	Tryptophan halogenase, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.739
CC_1754	CC_0562	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.780
CC_1754	CC_0787	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.	0.727
CC_1754	CC_0971	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.736
CC_1754	CC_0972	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.739
CC_1754	CC_1755	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.886
CC_1754	CC_2288	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	0.740
CC_1754	CC_2805	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	0.721
CC_1754	CC_2806	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.749
CC_1754	CC_2807	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Identified by match to protein family HMM.	0.726
CC_1754	CC_2808	TonB-dependent receptor; Identified by match to protein family HMM.	Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.	0.722
CC_1755	CC_1754	Tryptophan halogenase, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.886
CC_2288	CC_1754	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.740
CC_2805	CC_1754	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.721
CC_2805	CC_2806	Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.822