STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1767Response regulator; Identified by match to protein family HMM. (177 aa)    
Predicted Functional Partners:
CC_1768
Sensor histidine kinase; Identified by match to protein family HMM.
 0.996
CC_0248
Sensor histidine kinase; Identified by match to protein family HMM.
 
 0.982
CC_0247
Response regulator; Identified by match to protein family HMM.
  
  
 
0.911
CC_1769
SurF1 family protein; Identified by match to PFAM protein family HMM PF02104.
 
    0.908
CC_1770
Ubiquinol oxidase subunit IV; Similar to GB:X78196 PID:461330; identified by sequence similarity; putative.
 
    0.782
CC_1771
Ubiquinol oxidase subunit III; Identified by match to protein family HMM.
 
    0.728
CC_1773
Ubiquinol oxidase subunit II; Similar to PID:673470 PID:673471; identified by sequence similarity; putative.
 
    0.716
CC_1772
Ubiquinol oxidase subunit I; Identified by match to protein family HMM; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.687
CC_1774
Major facilitator family transporter; Identified by match to protein family HMM.
 
     0.487
CC_2670
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.449
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.