STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1787Identified by match to protein family HMM; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (362 aa)    
Predicted Functional Partners:
CC_1788
Identified by match to protein family HMM; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.969
CC_1786
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
 
    0.889
CC_1785
Efflux system protein; Similar to PID:1707646; identified by sequence similarity; putative.
 
 
 0.823
CC_1789
Hypothetical protein; Identified by Glimmer2; putative.
       0.714
CC_2090
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.592
CC_3120
Identified by match to protein family HMM; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.524
CC_0807
Identified by match to protein family HMM.
 
 
 0.523
CC_1204
Identified by match to protein family HMM; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.512
CC_1318
Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.
 
 
 0.511
CC_2091
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 
 0.445
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.