STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1802FMN oxidoreductase; Identified by match to PFAM protein family HMM PF00724. (430 aa)    
Predicted Functional Partners:
CC_0727
Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.
  
 
 0.589
CC_1801
4-coumarate--CoA ligase, putative; Identified by match to protein family HMM.
  
  
 0.584
CC_1805
Smp-30/Cgr1 family protein; Similar to GB:AL009126; identified by sequence similarity; putative.
     
 0.573
CC_1804
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
  
  
 0.569
CC_1803
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by match to protein family HMM.
  
  
 0.563
CC_1806
Identified by match to PFAM protein family HMM PF00441.
  
 
 0.441
CC_1807
Identified by match to PFAM protein family HMM PF00441.
  
 
 0.441
CC_0726
Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.
   
 
 0.435
CC_0653
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.434
RpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.431
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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