STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1832ABC transporter, permease protein; Identified by match to protein family HMM. (271 aa)    
Predicted Functional Partners:
CC_1831
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 0.973
CC_1833
ABC transporter, periplasmic substrate-binding protein; Similar to PID:1652373; identified by sequence similarity; putative.
 
  
 0.953
CC_0611
Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 0.793
CC_0609
Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative.
 
  
 0.717
CC_1830
Identified by match to PFAM protein family HMM PF01425.
 
    0.699
CC_2634
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 0.696
CC_1829
Urea amidolyase-related protein; Identified by match to PFAM protein family HMM PF00289.
 
     0.677
CC_2635
ABC transporter, permease protein, putative; Identified by match to protein family HMM.
 
     0.661
CC_1828
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.654
CC_1827
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.628
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.